I am not familiar with gluten ataxia. You should ask the professional(s) who made the diagnosis if cognitive difficulties might be associated with this disorder.
Your friend is lucky to have people who care about him. How did he get this far in life? How have you been able to accept his level of function or lack of function?
If your child is in the third grade and continues to have problems with reading, despite what the school is doing, I would be worried. First, clarify what the school is really doing.
Organization and Executive Function difficulties can be caused by a Learning Disability, by ADHD, or by both. It is important to clarify which is the problem.
Your description suggests that in addition to his learning disability (current school term for dyslexia) he might have a receptive/expressive language disability.